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    Efcab15 EF-hand calcium binding domain 15 [ Mus musculus (house mouse) ]

    Gene ID: 69441, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Efcab15provided by MGI
    Official Full Name
    EF-hand calcium binding domain 15provided by MGI
    Primary source
    MGI:MGI:1916691
    See related
    Ensembl:ENSMUSG00000020940 AllianceGenome:MGI:1916691
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700023F06Rik
    Summary
    Orthologous to human EFCAB15P (EF-hand calcium binding domain 15, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 168.3) See more
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    Genomic context

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    See Efcab15 in Genome Data Viewer
    Location:
    11 E1; 11 66.75 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (103089769..103099374, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (103198943..103208548, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10717 Neighboring gene predicted gene, 51919 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:103036322-103036635 Neighboring gene formin-like 1 Neighboring gene uncharacterized LOC118567870 Neighboring gene spermatogenesis associated 32 Neighboring gene predicted gene, 51920 Neighboring gene mitogen-activated protein kinase kinase kinase 14 Neighboring gene predicted gene, 34823

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC118352

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC69441

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001254724.2 → NP_001241653.1  uncharacterized protein LOC69441

      Status: VALIDATED

      Source sequence(s)
      AL662804, BF452544, BY706354
      Consensus CDS
      CCDS56814.1
      UniProtKB/TrEMBL
      A2AB62, Q497J8
      Related
      ENSMUSP00000021323.5, ENSMUST00000021323.11
      Conserved Domains (2) summary
      pfam13499
      Location:111 → 167
      EF-hand_7; EF-hand domain pair
      pfam13833
      Location:121 → 173
      EF-hand_8; EF-hand domain pair

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      103089769..103099374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011249227.1 → XP_011247529.1  uncharacterized protein LOC69441 isoform X1

      UniProtKB/TrEMBL
      Q497J8
      Conserved Domains (2) summary
      PTZ00449
      Location:159 → 243
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam13833
      Location:1 → 46
      EF-hand_8; EF-hand domain pair

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_027082.1: Suppressed sequence

      Description
      NM_027082.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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