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    NPGR1 no pollen germination related 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839637, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NPGR1
    Official Full Name
    no pollen germination related 1
    Primary source
    TAIR:AT1G27460
    Locus tag
    AT1G27460
    See related
    Araport:AT1G27460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17L21.25; F17L21_25; no pollen germination related 1
    Summary
    encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.
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    Genomic context

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    See NPGR1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (9534488..9537614)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Exostosin family protein Neighboring gene adenine phosphoribosyl transferase 1 Neighboring gene uncharacterized protein Neighboring gene transducin family protein / WD-40 repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A calmodulin-binding protein from Arabidopsis has an essential role in pollen germination. Golovkin M, et al. Proc Natl Acad Sci U S A, 2003 Sep 2. PMID 12928497, Free PMC Article
    2. A nanodomain-anchored scaffolding complex is required for the function and localization of phosphatidylinositol 4-kinase alpha in plants. Noack LC, et al. Plant Cell, 2022 Jan 20. PMID 34010411, Free PMC Article
    3. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332764.1
    NM_102510.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calmodulin binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasmic side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    is_active_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    no pollen germination related 1
    NP_564285.1
    • no pollen germination related 1 (NPGR1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2043 Blast hits to 1708 proteins in 322 species: Archae - 185; Bacteria - 626; Metazoa - 573; Fungi - 23; Plants - 162; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9534488..9537614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332763.1 → NP_001321149.1  no pollen germination related 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ39

    2. NM_102510.2 → NP_564285.1  no pollen germination related 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564285.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CB03
      UniProtKB/TrEMBL
      A0A5S9W4X1
      Conserved Domains (2) summary
      sd00006
      Location:585 → 613
      TPR; TPR repeat [structural motif]
      cl26002
      Location:584 → 684
      TPR_11; TPR repeat

    3. NM_001332764.1 → NP_001321148.1  no pollen germination related 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ16, A0A5S9W4X1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CB03.1

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