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    CLE17 CLAVATA3/ESR-RELATED 17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843428, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CLE17
    Official Full Name
    CLAVATA3/ESR-RELATED 17
    Primary source
    TAIR:AT1G70895
    Locus tag
    AT1G70895
    See related
    Araport:AT1G70895
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLAVATA3/ESR-RELATED 17
    Summary
    Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.
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    Genomic context

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    See CLE17 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (26727555..26729374)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene MLP-like protein 43 Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Control of Root Stem Cell Differentiation and Lateral Root Emergence by CLE16/17 Peptides in Arabidopsis. Zhang L, et al. Front Plant Sci, 2022. PMID 35519820, Free PMC Article
    2. The signaling peptide-encoding genes CLE16, CLE17 and CLE27 are dispensable for Arabidopsis shoot apical meristem activity. Gregory EF, et al. PLoS One, 2018. PMID 30114285, Free PMC Article
    3. Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature. Hazak O, et al. EMBO Rep, 2017 Aug. PMID 28607033, Free PMC Article
    4. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084339.2
    NM_105757.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell-cell signaling involved in cell fate commitment ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in lateral root formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in maintenance of root meristem identity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in maintenance of root meristem identity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in phloem development IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of cell differentiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of cell differentiation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in stem cell differentiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CLAVATA3/ESR-RELATED 17
    NP_001077808.1
    • CLAVATA3/ESR-RELATED 17 (CLE17); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_565004.1
    • CLAVATA3/ESR-RELATED 17 (CLE17); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26727555..26729374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105757.3 → NP_565004.1  CLAVATA3/ESR-RELATED 17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565004.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9H6
      UniProtKB/TrEMBL
      A0A178WDE5, A0A5S9WT58

    2. NM_001084339.2 → NP_001077808.1  CLAVATA3/ESR-RELATED 17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077808.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9H6
      UniProtKB/TrEMBL
      A0A178WDE5, A0A5S9WT58
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L9H6.1

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