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    CHR18 chromatin remodeling factor18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841251, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CHR18
    Official Full Name
    chromatin remodeling factor18
    Primary source
    TAIR:AT1G48310
    Locus tag
    AT1G48310
    See related
    Araport:AT1G48310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CHA18; chromatin remodeling factor18; F11A17.14; F11A17_14
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    Genomic context

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    See CHR18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Sequence:
    Chromosome: 1; NC_003070.9 (17848421..17853915, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene GRF zinc finger protein Neighboring gene diacylglycerol acyltransferase Neighboring gene ncRNA Neighboring gene Thioesterase superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chromatin remodeling factor CHR18 interacts with replication protein RPA1A to regulate the DNA replication stress response in Arabidopsis. Han JJ, et al. New Phytol, 2018 Oct. PMID 29974976
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. during DNA synthesis in plants, RPA1A interacts with CHR18 and recruits CHR18 to nuclear foci to resolve DNA replication stress.
      Title: Chromatin remodeling factor CHR18 interacts with replication protein RPA1A to regulate the DNA replication stress response in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001333322.1
    NM_001333323.1
    NM_001333324.1
    NM_103728.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    chromatin remodeling factor18
    NP_175265.3
    • chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17848421..17853915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103728.5 → NP_175265.3  chromatin remodeling factor18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175265.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7P0, A0A5S9WMY1, F4HWU9
      Conserved Domains (2) summary
      COG0553
      Location:164 → 621
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:172 → 395
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    2. NM_001333322.1 → NP_001321270.1  chromatin remodeling factor18 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQE4, A0A5S9WMY1, A0A7G2DW50
      Conserved Domains (2) summary
      COG0553
      Location:169 → 626
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18010
      Location:177 → 400
      DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

    3. NM_001333323.1 → NP_001321271.1  chromatin remodeling factor18 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQF7, A0A5S9WMY1

    4. NM_001333324.1 → NP_001321269.1  chromatin remodeling factor18 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6Q2, A0A1P8AQC0, A0A384KCX3
    Nucleotide Protein
    Heading Accession and Version

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