U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PDE338 Nucleic acid-binding proteins superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843502, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PDE338
    Official Full Name
    Nucleic acid-binding proteins superfamily
    Primary source
    TAIR:AT1G71720
    Locus tag
    AT1G71720
    See related
    Araport:AT1G71720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14O23.10; F14O23_10; PIGMENT DEFECTIVE 338; RbcL mRNA S1 binding domain protein; RLSB
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PDE338 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (26983615..26985990)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene choline kinase 1 Neighboring gene tRNA-Gly Neighboring gene DNAse I-like superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene nucleolar protein Neighboring gene Hypoxanthine-guanine phosphoribosyltransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PBR1 selectively controls biogenesis of photosynthetic complexes by modulating translation of the large chloroplast gene Ycf1 in Arabidopsis. Yang XF, et al. Cell Discov, 2016. PMID 27462450, Free PMC Article
    2. A novel RNA binding protein affects rbcL gene expression and is specific to bundle sheath chloroplasts in C4 plants. Bowman SM, et al. BMC Plant Biol, 2013 Sep 22. PMID 24053212, Free PMC Article
    3. An RNA Chaperone-Like Protein Plays Critical Roles in Chloroplast mRNA Stability and Translation in Arabidopsis and Maize. Jiang J, et al. Plant Cell, 2019 Jun. PMID 30962391, Free PMC Article
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001334505.1
    NM_105830.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA folding chaperone IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables misfolded RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA stabilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in nonphotochemical quenching IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastid organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastid translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of translation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Nucleic acid-binding proteins superfamily
    NP_177317.2
    • Nucleic acid-binding proteins superfamily; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: ribosomal protein S1 (TAIR:AT5G30510.1); Has 12228 Blast hits to 10737 proteins in 2456 species: Archae - 10; Bacteria - 9648; Metazoa - 36; Fungi - 16; Plants - 190; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26983615..26985990
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105830.4 → NP_177317.2  Nucleic acid-binding proteins superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177317.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      K7YLJ7, Q56XP0, Q9M9H4
      UniProtKB/TrEMBL
      A0A178WGI8, A0A654EYV7
      Conserved Domains (1) summary
      PRK07400
      Location:258 → 462
      PRK07400; 30S ribosomal protein S1; Reviewed

    2. NM_001334505.1 → NP_001321757.1  Nucleic acid-binding proteins superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARX7, A0A654EYV7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9H4.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.