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    SWIB/MDM2 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821215, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIB/MDM2 domain superfamily protein
    Primary source
    TAIR:AT3G03590
    Locus tag
    AT3G03590
    See related
    Araport:AT3G03590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12J13.13; T12J13_13
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (865122..867008, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosomal protein S2 Neighboring gene ELMO/CED-12 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111230.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWIB/MDM2 domain superfamily protein
    NP_566210.1
    • SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 1268 Blast hits to 1165 proteins in 257 species: Archae - 0; Bacteria - 219; Metazoa - 186; Fungi - 200; Plants - 424; Viruses - 10; Other Eukaryotes - 229 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      865122..867008 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111230.4 → NP_566210.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566210.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8N5, A0A384LAY0, Q8LA28, Q9SS61
      Conserved Domains (1) summary
      pfam02201
      Location:69 → 139
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

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