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    histidine-tRNA ligase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820187, updated on 18-Sep-2024

    Summary

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    Official Full Name
    histidine-tRNA ligase
    Primary source
    TAIR:AT3G10250
    Locus tag
    AT3G10250
    See related
    Araport:AT3G10250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (3167922..3170957, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene lycopene cyclase Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Reticulon family protein Neighboring gene DNA gyrase subunit B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel. Ferrández-Ayela A, et al. PLoS One, 2013. PMID 23840761, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337863.1
    NM_001337864.1
    NM_001337865.1
    NM_111860.5
    NM_202542.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    histidine-tRNA ligase
    NP_566370.1
    • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT5G04090.2); Has 239 Blast hits to 239 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    NP_974271.1
    • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT5G04090.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3167922..3170957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202542.3 → NP_974271.1  histidine-tRNA ligase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974271.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7C3, A0A384KW29, Q940M5, Q9SS36
      Conserved Domains (1) summary
      pfam09713
      Location:19 → 69
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    2. NM_111860.5 → NP_566370.1  histidine-tRNA ligase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566370.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7C3, A0A384KW29, Q940M5, Q9SS36
      Conserved Domains (1) summary
      pfam09713
      Location:19 → 69
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    3. NM_001337863.1 → NP_001327818.1  histidine-tRNA ligase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTH3, Q9SS36
      Conserved Domains (1) summary
      pfam09713
      Location:19 → 69
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    4. NM_001337864.1 → NP_001327816.1  histidine-tRNA ligase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7C3, A0A384KW29, Q940M5, Q9SS36
      Conserved Domains (1) summary
      pfam09713
      Location:19 → 69
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)

    5. NM_001337865.1 → NP_001327817.1  histidine-tRNA ligase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7C3, A0A384KW29, Q940M5, Q9SS36
      Conserved Domains (1) summary
      pfam09713
      Location:19 → 69
      A_thal_3526; Plant protein 1589 of unknown function (A_thal_3526)
    Nucleotide Protein
    Heading Accession and Version

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