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    Fumarylacetoacetate (FAA) hydrolase family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820922, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Fumarylacetoacetate (FAA) hydrolase family
    Primary source
    TAIR:AT3G16700
    Locus tag
    AT3G16700
    See related
    Araport:AT3G16700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (5687696..5689796)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DNA binding / DNA-directed RNA polymerase Neighboring gene Nodulin MtN3 family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084695.2
    NM_001338252.1
    NM_112543.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acylpyruvate hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables copper ion binding HDA PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Fumarylacetoacetate (FAA) hydrolase family
    NP_001078164.1
    • Fumarylacetoacetate (FAA) hydrolase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234); BEST Arabidopsis thaliana protein match is: Fumarylacetoacetate (FAA) hydrolase family (TAIR:AT4G15940.1); Has 9692 Blast hits to 9562 proteins in 1885 species: Archae - 224; Bacteria - 6431; Metazoa - 295; Fungi - 422; Plants - 61; Viruses - 0; Other Eukaryotes - 2259 (source: NCBI BLink).
    NP_188292.1
    • Fumarylacetoacetate (FAA) hydrolase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234); BEST Arabidopsis thaliana protein match is: Fumarylacetoacetate (FAA) hydrolase family (TAIR:AT4G15940.1); Has 10996 Blast hits to 10845 proteins in 1927 species: Archae - 263; Bacteria - 6882; Metazoa - 304; Fungi - 435; Plants - 73; Viruses - 0; Other Eukaryotes - 3039 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5687696..5689796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338251.1 → NP_001327082.1  Fumarylacetoacetate (FAA) hydrolase family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q681F1

    2. NM_001084695.2 → NP_001078164.1  Fumarylacetoacetate (FAA) hydrolase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078164.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQJ9
      Conserved Domains (2) summary
      COG0179
      Location:15 → 148
      MhpD; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport and catabolism]
      pfam01557
      Location:17 → 148
      FAA_hydrolase; Fumarylacetoacetate (FAA) hydrolase family

    3. NM_112543.3 → NP_188292.1  Fumarylacetoacetate (FAA) hydrolase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188292.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LUR3
      UniProtKB/TrEMBL
      A0A178VDU3, A0A5S9XCZ2, A0A7G2EJ20
      Conserved Domains (1) summary
      COG0179
      Location:15 → 210
      MhpD; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport and catabolism]

    4. NM_001338252.1 → NP_001327081.1  Fumarylacetoacetate (FAA) hydrolase family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q681F1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUR3.1

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