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    actin cross-linking protein, putative (DUF569) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822493, updated on 18-Sep-2024

    Summary

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    Official Full Name
    actin cross-linking protein, putative (DUF569)
    Primary source
    TAIR:AT3G28630
    Locus tag
    AT3G28630
    See related
    Araport:AT3G28630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CROLIN 1; CROLIN1
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (10728951..10730898)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis CROLIN1, a novel plant actin-binding protein, functions in cross-linking and stabilizing actin filaments. Jia H, et al. J Biol Chem, 2013 Nov 8. PMID 24072702, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_113783.3
    NM_180314.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin filament binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    actin cross-linking protein, putative (DUF569)
    NP_189504.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF569) (TAIR:AT3G01311.1); Has 233 Blast hits to 211 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_850645.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF569) (TAIR:AT3G01311.1); Has 232 Blast hits to 210 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10728951..10730898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113783.3 → NP_189504.2  actin cross-linking protein, putative (DUF569) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189504.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFY2, A0A178VID4, A0A384L5A7, Q8GXC9
      Conserved Domains (1) summary
      pfam04601
      Location:33 → 173
      DUF569; Domain of unknown function (DUF569)

    2. NM_180314.2 → NP_850645.2  actin cross-linking protein, putative (DUF569) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850645.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VID4, F4J0C4
      Conserved Domains (1) summary
      pfam04601
      Location:33 → 173
      DUF569; Domain of unknown function (DUF569)
    Nucleotide Protein
    Heading Accession and Version

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