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    transmembrane protein, putative (DUF1216) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822511, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF1216)
    Primary source
    TAIR:AT3G28790
    Locus tag
    AT3G28790
    See related
    Araport:AT3G28790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (10813224..10815699, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1216) Neighboring gene mutator-like transposase Neighboring gene pseudo Neighboring gene mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113800.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF1216)
    NP_189521.1
    • Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28830.1); Has 177545 Blast hits to 90545 proteins in 3397 species: Archae - 691; Bacteria - 36593; Metazoa - 57458; Fungi - 33385; Plants - 8167; Viruses - 3173; Other Eukaryotes - 38078 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10813224..10815699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113800.4 → NP_189521.1  transmembrane protein, putative (DUF1216) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189521.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5U7, A0A654FGT3, Q9LH95
      Conserved Domains (1) summary
      pfam06746
      Location:473 → 581
      DUF1216; Protein of unknown function (DUF1216)
    Nucleotide Protein
    Heading Accession and Version

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