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    ARP5 actin-related protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820416, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARP5
    Official Full Name
    actin-related protein 5
    Primary source
    TAIR:AT3G12380
    Locus tag
    AT3G12380
    See related
    Araport:AT3G12380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    actin-related protein 5; ACTIN-RELATED PROTEIN 5; ATARP5
    Summary
    Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.
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    Genomic context

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    See ARP5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (3938183..3941935, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ankyrin repeat family protein Neighboring gene Ribosomal protein L10 family protein Neighboring gene tRNA-Lys Neighboring gene Nascent polypeptide-associated complex (NAC), alpha subunit family protein Neighboring gene Ubiquitin-conjugating enzyme/RWD-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair. Kandasamy MK, et al. Dev Biol, 2009 Nov 1. PMID 19679120, Free PMC Article
    2. AtINO80 and AtARP5 physically interact and play common as well as distinct roles in regulating plant growth and development. Kang H, et al. New Phytol, 2019 Jul. PMID 30843208
    3. Epigenetic silencing of a multifunctional plant stress regulator. Zander M, et al. Elife, 2019 Aug 16. PMID 31418686, Free PMC Article
    4. Arabidopsis contains ancient classes of differentially expressed actin-related protein genes. McKinney EC, et al. Plant Physiol, 2002 Mar. PMID 11891255, Free PMC Article
    5. Functional characterization of type-B response regulators in the Arabidopsis cytokinin response. Hill K, et al. Plant Physiol, 2013 May. PMID 23482873, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These findings provide insights into the common and distinct roles of AtINO80 and AtARP5 in diverse aspects of plant development.
      Title: AtINO80 and AtARP5 physically interact and play common as well as distinct roles in regulating plant growth and development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202941.1
    NM_112073.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within actin filament-based process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within multicellular organism development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of cytokinin-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of cytokinin-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of root meristem growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of root meristem growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin-related protein 5
    NP_001189870.1
    • actin-related protein 5 (ARP5); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1).
    NP_566422.4
    • actin-related protein 5 (ARP5); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 21592 Blast hits to 13553 proteins in 2425 species: Archae - 18; Bacteria - 280; Metazoa - 9176; Fungi - 4874; Plants - 2192; Viruses - 30; Other Eukaryotes - 5022 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3938183..3941935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112073.5 → NP_566422.4  actin-related protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566422.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z2X1, C8YXA1, F4J9R3, Q940Z2, Q9C7A3, Q9LHH0
      UniProtKB/TrEMBL
      A0A5S9XBL9, A0A654FBN3
      Conserved Domains (1) summary
      cl17037
      Location:15 → 305
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    2. NM_001202941.1 → NP_001189870.1  actin-related protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189870.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XBL9, A0A654FBN3
      Conserved Domains (1) summary
      cl17037
      Location:15 → 311
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q940Z2.2

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