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    Putative adipose-regulatory protein (Seipin) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839854, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative adipose-regulatory protein (Seipin)
    Primary source
    TAIR:AT1G29760
    Locus tag
    AT1G29760
    See related
    Araport:AT1G29760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CELLULOSE SYNTHASE LIKE D4; CLSD4; F1N18.18; F1N18_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (10422292..10424513)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene receptor-like kinase in flowers 1 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation. Greer MS, et al. Plant Cell, 2020 Sep. PMID 32690719, Free PMC Article
    2. SEIPIN Proteins Mediate Lipid Droplet Biogenesis to Promote Pollen Transmission and Reduce Seed Dormancy. Taurino M, et al. Plant Physiol, 2018 Feb. PMID 29203558, Free PMC Article
    3. Arabidopsis SEIPIN Proteins Modulate Triacylglycerol Accumulation and Influence Lipid Droplet Proliferation. Cai Y, et al. Plant Cell, 2015 Sep. PMID 26362606, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation.
      Title: SEIPIN Isoforms Interact with the Membrane-Tethering Protein VAP27-1 for Lipid Droplet Formation.
    2. Seipin2 (At1g29760) modulate triacylglycerol accumulation and influence lipid droplet proliferation.
      Title: Arabidopsis SEIPIN Proteins Modulate Triacylglycerol Accumulation and Influence Lipid Droplet Proliferation.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_102716.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid droplet formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within lipid droplet organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in lipid droplet organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen germination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of double fertilization forming a zygote and endosperm IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within seed dormancy process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Putative adipose-regulatory protein (Seipin)
    NP_174269.1
    • Putative adipose-regulatory protein (Seipin); CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: Putative adipose-regulatory protein (Seipin) (TAIR:AT2G34380.1); Has 493 Blast hits to 422 proteins in 86 species: Archae - 0; Bacteria - 253; Metazoa - 134; Fungi - 11; Plants - 78; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10422292..10424513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102716.4 → NP_174269.1  Putative adipose-regulatory protein (Seipin) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174269.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I340, Q9FXF3
      UniProtKB/TrEMBL
      A0A178WNK1, A0A5S9WBY2
      Conserved Domains (1) summary
      pfam06775
      Location:273 → 492
      Seipin; Putative adipose-regulatory protein (Seipin)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I340.1

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