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    YTH family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826804, updated on 18-Sep-2024

    Summary

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    Official Full Name
    YTH family protein
    Primary source
    TAIR:AT4G11970
    Locus tag
    AT4G11970
    See related
    Araport:AT4G11970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16J13.40; F16J13_40
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (7180350..7183677)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1191) Neighboring gene PGR5-like B Neighboring gene ncRNA Neighboring gene nudix hydrolase homolog 14 Neighboring gene tRNA-Val Neighboring gene Cell cycle regulated microtubule associated protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ECT12, an YTH-domain protein, is a potential mRNA m(6)A reader that affects abiotic stress responses by modulating mRNA stability in Arabidopsis. Amara U, et al. Plant Physiol Biochem, 2024 Jan. PMID 38071803
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340755.1
    NM_001340756.1
    NM_117267.5
    NM_202808.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA N6-methyladenosine methyltransferase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    YTH family protein
    NP_001190703.1
    • YTH family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 30 (TAIR:AT1G30460.1).
    NP_192934.2
    • YTH family protein; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 30 (TAIR:AT1G30460.1); Has 1025 Blast hits to 969 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 200; Plants - 317; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    NP_974537.1
    • YTH family protein; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 30 (TAIR:AT1G30460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7180350..7183677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203774.1 → NP_001190703.1  YTH family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190703.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EYW0, F4JPV0
      Conserved Domains (1) summary
      pfam04146
      Location:72 → 208
      YTH; YT521-B-like domain

    2. NM_001340754.1 → NP_001328271.1  YTH family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B446, A0A5S9XRR2

    3. NM_001340753.1 → NP_001328272.1  YTH family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXH7, F4JPV2

    4. NM_117267.5 → NP_192934.2  YTH family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192934.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXH7, F4JPV2
      Conserved Domains (1) summary
      pfam04146
      Location:72 → 208
      YTH; YT521-B-like domain

    5. NM_202808.3 → NP_974537.1  YTH family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974537.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XRR2, Q9SZ62
      Conserved Domains (1) summary
      pfam04146
      Location:72 → 208
      YTH; YT521-B-like domain

    6. NM_001340755.1 → NP_001328270.1  YTH family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B456

    7. NM_001340756.1 → NP_001328269.1  YTH family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B464
    Nucleotide Protein
    Heading Accession and Version

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