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    transcription regulator/ zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823915, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription regulator/ zinc ion binding protein
    Primary source
    TAIR:AT3G47610
    Locus tag
    AT3G47610
    See related
    Araport:AT3G47610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (17549111..17551520)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene myb domain protein 94 Neighboring gene TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 Neighboring gene translocator assembly/maintenance protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_114629.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in rescue of stalled ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RQC-trigger complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transcription regulator/ zinc ion binding protein
    NP_190345.1
    • transcription regulators;zinc ion binding; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2HC5-type (InterPro:IPR009349); Has 342 Blast hits to 320 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 117; Plants - 38; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17549111..17551520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114629.4 → NP_190345.1  transcription regulator/ zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190345.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VC45, A0A654FDQ4, Q9SN77
      Conserved Domains (1) summary
      pfam06221
      Location:157 → 197
      zf-C2HC5; Putative zinc finger motif, C2HC5-type
    Nucleotide Protein
    Heading Accession and Version

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