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    Clathrin adaptor complex small chain family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824250, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Clathrin adaptor complex small chain family protein
    Primary source
    TAIR:AT3G50860
    Locus tag
    AT3G50860
    See related
    Araport:AT3G50860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (18901997..18904197)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene tRNA-Val Neighboring gene MIP18 family protein (DUF59) Neighboring gene Putative methyltransferase family protein Neighboring gene GATA type zinc finger transcription factor family protein Neighboring gene DNA glycosylase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ADAPTOR PROTEIN-3 Complex Mediates Pollen Tube Growth by Coordinating Vacuolar Targeting and Organization. Feng QN, et al. Plant Physiol, 2018 May. PMID 29523712, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A role for AP-3 in pollen tube growth.
      Title: The ADAPTOR PROTEIN-3 Complex Mediates Pollen Tube Growth by Coordinating Vacuolar Targeting and Organization.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114946.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of AP-3 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Clathrin adaptor complex small chain family protein
    NP_190655.2
    • Clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G19790.1); Has 2004 Blast hits to 2002 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 926; Fungi - 430; Plants - 303; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18901997..18904197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339486.1 → NP_001327312.1  Clathrin adaptor complex small chain family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRX6, A0A5S9XKG8, A0A654FFL2

    2. NM_114946.2 → NP_190655.2  Clathrin adaptor complex small chain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190655.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZ37, Q9SVL3
      UniProtKB/TrEMBL
      A0A5S9XKG8, A0A654FFL2
      Conserved Domains (1) summary
      COG5030
      Location:1 → 151
      APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZ37.1

    Gene LinkOut

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