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    FG-GAP repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824269, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FG-GAP repeat-containing protein
    Primary source
    TAIR:AT3G51050
    Locus tag
    AT3G51050
    See related
    Araport:AT3G51050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (18953842..18957963)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene metal ion-binding protein Neighboring gene thioredoxin H-type 1 Neighboring gene RTE1-homolog Neighboring gene Lateral root primordium (LRP) protein-like protein Neighboring gene ncRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NERD1 is required for primexine formation and plasma membrane undulation during microsporogenesis in Arabidopsis thaliana. Xu D, et al. aBIOTECH, 2020 Oct. PMID 36304126, Free PMC Article
    2. A genome-wide association study reveals a novel regulator of ovule number and fertility in Arabidopsis thaliana. Yuan J, et al. PLoS Genet, 2019 Feb. PMID 30742622, Free PMC Article
    3. A broadly conserved NERD genetically interacts with the exocyst to affect root growth and cell expansion. Cole RA, et al. J Exp Bot, 2018 Jun 27. PMID 29722827, Free PMC Article
    4. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_114965.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in pollen exine formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within unidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    colocalizes_with Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    FG-GAP repeat-containing protein
    NP_190674.2
    • FG-GAP repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell-matrix adhesion; LOCATED IN: integrin complex, integral to membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 99 Blast hits to 94 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18953842..18957963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114965.4 → NP_190674.2  FG-GAP repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190674.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VL07, A0A654FER5, F4J381, Q8W0Z8
      Conserved Domains (1) summary
      cl24051
      Location:53 → 125
      BBS2_Mid; Ciliary BBSome complex subunit 2, middle region
    Nucleotide Protein
    Heading Accession and Version

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