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    G18E autophagy-related protein 18E [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830397, updated on 18-Sep-2024

    Summary

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    Official Symbol
    G18E
    Official Full Name
    autophagy-related protein 18E
    Primary source
    TAIR:AT5G05150
    Locus tag
    AT5G05150
    See related
    Araport:AT5G05150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E; ATATG18E; ATG18E; autophagy-related gene 18E; K2A11.2; K2A11_2
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    Genomic context

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    See G18E in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (1524699..1526199, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNA/RNA helicase protein Neighboring gene Transcription elongation factor (TFIIS) family protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Cellulose synthase family protein Neighboring gene myosin heavy chain, striated protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    autophagy-related protein 18E
    NP_196134.1
    • autophagy-related gene 18E (G18E); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1524699..1526199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120597.2 → NP_196134.1  autophagy-related protein 18E [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196134.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FHK8
      UniProtKB/TrEMBL
      A0A178UHS7
      Conserved Domains (3) summary
      COG2319
      Location:166 → 279
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:165 → 201
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:102 → 279
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FHK8.1

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