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    EMB1873 porphyromonas-type peptidyl-arginine deiminase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830713, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB1873
    Official Full Name
    porphyromonas-type peptidyl-arginine deiminase family protein
    Primary source
    TAIR:AT5G08170
    Locus tag
    AT5G08170
    See related
    Araport:AT5G08170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGMATINE IMINOHYDROLASE; ATAIH; EMBRYO DEFECTIVE 1873; T22D6.110; T22D6_110
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    Genomic context

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    See EMB1873 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (2628300..2631295, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene suppressor of phytochrome b 5 Neighboring gene serine/threonine protein kinase 3 Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of plant agmatine iminohydrolase, the last missing link in polyamine biosynthesis of plants. Janowitz T, et al. FEBS Lett, 2003 Jun 5. PMID 12782327
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001342988.1
    NM_001342989.1
    NM_001342990.1
    NM_001342991.1
    NM_120900.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables agmatine deiminase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables agmatine deiminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-arginine deiminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    acts_upstream_of_or_within polyamine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in putrescine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in putrescine biosynthetic process from arginine IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    porphyromonas-type peptidyl-arginine deiminase family protein
    NP_196434.1
    • EMBRYO DEFECTIVE 1873 (EMB1873); CONTAINS InterPro DOMAIN/s: Agmatine deiminase (InterPro:IPR017754), Peptidyl-arginine deiminase, Porphyromonas-type (InterPro:IPR007466); Has 2547 Blast hits to 2545 proteins in 784 species: Archae - 10; Bacteria - 1723; Metazoa - 8; Fungi - 32; Plants - 53; Viruses - 9; Other Eukaryotes - 712 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2628300..2631295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120900.6 → NP_196434.1  porphyromonas-type peptidyl-arginine deiminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196434.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWW7, Q94IC7, Q9LEZ0
      UniProtKB/TrEMBL
      A0A178UAZ4, A0A5S9Y2S8, A0A654FZI9
      Conserved Domains (1) summary
      PLN02690
      Location:4 → 375
      PLN02690; Agmatine deiminase

    2. NM_001342988.1 → NP_001330496.1  porphyromonas-type peptidyl-arginine deiminase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAZ8

    3. NM_001342991.1 → NP_001330495.1  porphyromonas-type peptidyl-arginine deiminase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAZ8

    4. NM_001342990.1 → NP_001330494.1  porphyromonas-type peptidyl-arginine deiminase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAZ4, A0A1P8BB17

    5. NM_001342989.1 → NP_001330497.1  porphyromonas-type peptidyl-arginine deiminase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAZ8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWW7.2

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