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    smr (Small MutS Related) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832417, updated on 18-Sep-2024

    Summary

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    Official Full Name
    smr (Small MutS Related) domain-containing protein
    Primary source
    TAIR:AT5G23520
    Locus tag
    AT5G23520
    See related
    Araport:AT5G23520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQM1.22; MQM1_22
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (7928993..7931793, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SWIB/MDM2, Plus-3 and GYF domain-containing protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene carboxyesterase 18 Neighboring gene KOW domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343814.1
    NM_122259.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    smr (Small MutS Related) domain-containing protein
    NP_197743.1
    • smr (Small MutS Related) domain-containing protein; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7928993..7931793 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122259.3 → NP_197743.1  smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197743.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3R7, A0A7G2FCJ0, Q9LT11
      Conserved Domains (2) summary
      pfam08590
      Location:245 → 301
      DUF1771; Domain of unknown function (DUF1771)
      cl02619
      Location:312 → 428
      Smr; Smr domain

    2. NM_001343814.1 → NP_001330345.1  smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3R7, A0A7G2FCJ0, Q9LT11
      Conserved Domains (2) summary
      pfam08590
      Location:245 → 301
      DUF1771; Domain of unknown function (DUF1771)
      cl02619
      Location:312 → 428
      Smr; Smr domain
    Nucleotide Protein
    Heading Accession and Version

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