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    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836067, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Primary source
    TAIR:AT5G59480
    Locus tag
    AT5G59480
    See related
    Araport:AT5G59480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2O15.10; F2O15_10
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (23979390..23982208, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GRAS family transcription factor Neighboring gene ncRNA Neighboring gene scarecrow-like transcription factor 11 (SCL11) Neighboring gene Mannose-P-dolichol utilization defect 1 protein Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345353.1
    NM_001345354.1
    NM_001345355.1
    NM_125339.3
    NM_180892.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    NP_200756.2
    • Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G02230.2); Has 2207 Blast hits to 2204 proteins in 462 species: Archae - 6; Bacteria - 693; Metazoa - 0; Fungi - 141; Plants - 199; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).
    NP_851223.1
    • Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G02230.2); Has 2253 Blast hits to 2250 proteins in 467 species: Archae - 3; Bacteria - 705; Metazoa - 0; Fungi - 141; Plants - 199; Viruses - 0; Other Eukaryotes - 1205 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23979390..23982208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180892.2 → NP_851223.1  Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851223.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YFG3, Q9LTI2
      Conserved Domains (2) summary
      TIGR01509
      Location:17 → 233
      HAD-SF-IA-v3; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
      cl21460
      Location:16 → 233
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. NM_125339.3 → NP_200756.2  Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200756.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YFG3, F4KJ69
      Conserved Domains (2) summary
      TIGR01509
      Location:17 → 232
      HAD-SF-IA-v3; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
      cl21460
      Location:16 → 232
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    3. NM_001345355.1 → NP_001330070.1  Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YFG3, Q9LTI2

    4. NM_001345353.1 → NP_001330068.1  Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YFG3, Q9LTI2

    5. NM_001345354.1 → NP_001330069.1  Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YFG3, Q9LTI2
    Nucleotide Protein
    Heading Accession and Version

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