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    RPA70D Replication factor-A protein 1-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836221, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPA70D
    Official Full Name
    Replication factor-A protein 1-like protein
    Primary source
    TAIR:AT5G61000
    Locus tag
    AT5G61000
    See related
    Araport:AT5G61000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRPA70D; MSL3.120; MSL3_120; Replication Protein A 1D; RPA1D
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    Genomic context

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    See RPA70D in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (24549479..24552855, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene exocyst subunit exo70 family protein E2 Neighboring gene evolutionarily conserved C-terminal region 3 Neighboring gene glycine-rich RNA-binding protein 3 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_125493.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Replication factor-A protein 1-like protein
    NP_200908.1
    • RPA70D; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: RPA70-kDa subunit B (TAIR:AT5G08020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24549479..24552855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125493.4 → NP_200908.1  Replication factor-A protein 1-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200908.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FME0
      UniProtKB/TrEMBL
      A0A178UJ91, A0A5S9YG48
      Conserved Domains (1) summary
      TIGR00617
      Location:4 → 622
      rpa1; replication factor-a protein 1 (rpa1)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FME0.1

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