Phox3 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: Phox3
Official Full Name: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Primary source: TAIR:AT5G20360
Locus tag: AT5G20360
See related: Araport:AT5G20360
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F5O24.250; F5O24_250
Summary: Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
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Genomic context

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See Phox3 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 3

Sequence:: Chromosome: 5; NC_003076.8 (6881332..6885093, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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NM_001343653.1

Supported by ESTs:

NM_001343654.1

Supported by ESTs:

NM_001343655.1

Supported by ESTs:

NM_001343656.1

Supported by ESTs:

NM_001343657.1

Supported by ESTs:

NM_001343658.1

Supported by ESTs:

NM_122043.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in cytoplasm	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein

NP_197536.1

Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G25290.3); Has 5561 Blast hits to 4736 proteins in 360 species: Archae - 27; Bacteria - 205; Metazoa - 2716; Fungi - 742; Plants - 1032; Viruses - 2; Other Eukaryotes - 837 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

6881332..6885093 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_122043.3 → NP_197536.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_197536.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4K487

UniProtKB/TrEMBL

A0A5S9Y6G0

Conserved Domains (3) summary

smart00666
Location:361 → 436

PB1; PB1 domain

sd00006
Location:126 → 154

TPR; TPR repeat [structural motif]

cl26005
Location:126 → 250

PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
NM_001343654.1 → NP_001332689.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1R7T3E1, A0A654G2S6
NM_001343653.1 → NP_001332690.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

F4K487

UniProtKB/TrEMBL

A0A5S9Y6G0

Conserved Domains (3) summary

smart00666
Location:361 → 436

PB1; PB1 domain

sd00006
Location:126 → 154

TPR; TPR repeat [structural motif]

cl26005
Location:126 → 250

PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
NM_001343655.1 → NP_001332688.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1R7T3E0, A0A7G2FDZ0
NM_001343657.1 → NP_001332686.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BHR8, A0A7G2FDZ0
NM_001343656.1 → NP_001332687.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BHR8, A0A7G2FDZ0
NM_001343658.1 → NP_001332685.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1R7T3E0, A0A7G2FDZ0