U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    FIP1 FH interacting protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839714, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    FIP1
    Official Full Name
    FH interacting protein 1
    Primary source
    TAIR:AT1G28200
    Locus tag
    AT1G28200
    See related
    Araport:AT1G28200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3H9.14; F3H9_14; FH interacting protein 1; FH INTERACTING PROTEIN 1
    Summary
    VirF-interacting protein FIP1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See FIP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (9849844..9852449, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene DNAJ heat shock family protein Neighboring gene purine permease 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The polyadenylation factor FIP1 is important for plant development and root responses to abiotic stresses. Téllez-Robledo B, et al. Plant J, 2019 Sep. PMID 31111599
    2. The Arabidopsis pre-mRNA 3' end processing related protein FIP1 promotes seed dormancy via the DOG1 and ABA pathways. Li Y, et al. Plant J, 2023 Jul. PMID 37035898
    3. Structural basis of jasmonate-amido synthetase FIN219 in complex with glutathione S-transferase FIP1 during the JA signal regulation. Chen CY, et al. Proc Natl Acad Sci U S A, 2017 Mar 7. PMID 28223489, Free PMC Article
    4. Glutathione S-transferase interacting with far-red insensitive 219 is involved in phytochrome A-mediated signaling in Arabidopsis. Chen IC, et al. Plant Physiol, 2007 Mar. PMID 17220357, Free PMC Article
    5. Characterization of the arabidopsis formin-like protein AFH1 and its interacting protein. Banno H, et al. Plant Cell Physiol, 2000 May. PMID 10929945

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Arabidopsis pre-mRNA 3' end processing related protein FIP1 promotes seed dormancy via the DOG1 and ABA pathways.
      Title: The Arabidopsis pre-mRNA 3' end processing related protein FIP1 promotes seed dormancy via the DOG1 and ABA pathways.
    2. FIP1-mediated alternative polyadenylation is important for plant development and stress responses.
      Title: The polyadenylation factor FIP1 is important for plant development and root responses to abiotic stresses.
    3. We show that the rotated C-terminal domain of FIN219 alters ATP binding and the core structure of the active site. We further demonstrate that this unique FIN219-FIP1 structure is crucial for increasing FIN219 activity and determines the priority of substrate binding.
      Title: Structural basis of jasmonate-amido synthetase FIN219 in complex with glutathione S-transferase FIP1 during the JA signal regulation.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_102585.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    FH interacting protein 1
    NP_174141.1
    • FH interacting protein 1 (FIP1); CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT2G22475.1); Has 416 Blast hits to 413 proteins in 43 species: Archae - 4; Bacteria - 12; Metazoa - 9; Fungi - 9; Plants - 369; Viruses - 1; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9849844..9852449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332805.1 → NP_001322847.1  FH interacting protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SE96
      UniProtKB/TrEMBL
      A0A178WL22, A0A5S9W5M8
      Conserved Domains (1) summary
      cl17171
      Location:149 → 256
      PH-like; Pleckstrin homology-like domain

    2. NM_102585.3 → NP_174141.1  FH interacting protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174141.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SE96
      UniProtKB/TrEMBL
      A0A178WL22, A0A5S9W5M8
      Conserved Domains (1) summary
      cl17171
      Location:149 → 256
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SE96.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools