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    PRD1 putative recombination initiation defect 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827058, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PRD1
    Official Full Name
    putative recombination initiation defect 1
    Primary source
    TAIR:AT4G14180
    Locus tag
    AT4G14180
    See related
    Araport:AT4G14180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPRD1; DL3130W; FCAALL.114; putative recombination initiation defect 1
    Summary
    Encodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair.
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    Genomic context

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    See PRD1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (8178330..8184225)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene F-box family protein-like protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene phytoene desaturase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtPRD1 is required for meiotic double strand break formation in Arabidopsis thaliana. De Muyt A, et al. EMBO J, 2007 Sep 19. PMID 17762870, Free PMC Article
    2. MTOPVIB interacts with AtPRD1 and plays important roles in formation of meiotic DNA double-strand breaks in Arabidopsis. Tang Y, et al. Sci Rep, 2017 Aug 30. PMID 28855712, Free PMC Article
    3. A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana. De Muyt A, et al. PLoS Genet, 2009 Sep. PMID 19763177, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • At4g14180_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At4g14180_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_001340905.1
    NM_001340906.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chiasma assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in meiotic DNA double-strand break formation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within meiotic DNA double-strand break formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within meiotic DNA double-strand break formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 

    General protein information

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    Preferred Names
    putative recombination initiation defect 1
    NP_001319933.1
    • putative recombination initiation defect 1 (PRD1); FUNCTIONS IN: protein binding, protein homodimerization activity; INVOLVED IN: chiasma assembly, meiotic DNA double-strand break formation; LOCATED IN: chloroplast; EXPRESSED IN: floral bud; Has 86 Blast hits to 84 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8178330..8184225
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340905.1 → NP_001319933.1  putative recombination initiation defect 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8QW54, F4JUM6, O23277
      UniProtKB/TrEMBL
      A0A178V135, A0A654FP40

    2. NM_001340906.1 → NP_001329589.1  putative recombination initiation defect 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B861, A0A654FP40
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23277.3

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