XTH15 xyloglucan endotransglucosylase/hydrolase 15 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: XTH15
Official Full Name: xyloglucan endotransglucosylase/hydrolase 15
Primary source: TAIR:AT4G14130
Locus tag: AT4G14130
See related: Araport:AT4G14130
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: DL3105C; FCAALL.173; XTR7; xyloglucan endotransglucosylase/hydrolase 15; xyloglucan endotransglycosylase 7
Summary: xyloglucan endotransglycosylase-related protein (XTR7)
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Genomic context

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See XTH15 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 3

Sequence:: Chromosome: 4; NC_003075.7 (8137020..8138392, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

catalytic capacities of two aluminium-repressed Arabidopsis thaliana xyloglucan endotransglucosylase/hydrolases, XTH15 and XTH31
Title: Distinct catalytic capacities of two aluminium-repressed Arabidopsis thaliana xyloglucan endotransglucosylase/hydrolases, XTH15 and XTH31, heterologously produced in Pichia.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_117490.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables polysaccharide binding	ISS Inferred from Sequence or Structural Similarity more info
enables xyloglucan-specific endo-beta-1,4-glucanase activity	IEA Inferred from Electronic Annotation more info
enables xyloglucan:xyloglucosyl transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cell wall biogenesis	IEA Inferred from Electronic Annotation more info
involved_in response to far red light	IEP Inferred from Expression Pattern more info	PubMed
involved_in xyloglucan metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: xyloglucan endotransglucosylase/hydrolase 15

NP_193149.2

xyloglucan endotransglucosylase/hydrolase 15 (XTH15); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 16 (TAIR:AT3G23730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

8137020..8138392 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_117490.4 → NP_193149.2 xyloglucan endotransglucosylase/hydrolase 15 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_193149.2

Status: REVIEWED

UniProtKB/Swiss-Prot

O23272, Q38911, Q5M726

UniProtKB/TrEMBL

A0A178UV66, A0A5S9XS56, A0A654FPF9

Conserved Domains (1) summary

cd02176
Location:23 → 284

GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16