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    Cog6 Component of oligomeric golgi complex 6 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35953, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cog6provided by FlyBase
    Official Full Name
    Component of oligomeric golgi complex 6provided by FlyBase
    Primary source
    FLYBASE:FBgn0033401
    Locus tag
    Dmel_CG1968
    See related
    AllianceGenome:FB:FBgn0033401
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG1968; Dmel\CG1968
    Summary
    Predicted to be involved in intra-Golgi vesicle-mediated transport. Part of Golgi transport complex. Is expressed in several structures, including embryonic proventriculus inner layer; embryonic/larval midgut primordium; embryonic/larval salivary gland; foregut primordium; and gut section. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See Cog6 in Genome Data Viewer
    Location:
    45C1-45C4; 2-60 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (9286827..9289026)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (5174332..5176531)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Protein kinase N Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45132 Neighboring gene uncharacterized protein Neighboring gene Mitotic arrest-deficient 1 Neighboring gene DNA fragmentation factor-related protein 2 Neighboring gene Myd88

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in intra-Golgi vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    part_of Golgi transport complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of Golgi transport complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of Golgi transport complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    component of oligomeric golgi complex 6
    Names
    CG1968-PA
    CG1968-PB
    Cog6-PA
    Cog6-PB

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      9286827..9289026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136632.5NP_610476.1  component of oligomeric golgi complex 6, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610476.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9V564
      Related
      FBpp0087677
      Conserved Domains (1) summary
      pfam06419
      Location:35319
      COG6; Conserved oligomeric complex COG6
    2. NM_165673.3NP_724783.1  component of oligomeric golgi complex 6, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_724783.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q95RW7, Q9V564
      Related
      FBpp0087676
      Conserved Domains (1) summary
      smart01087
      Location:47627
      COG6; Conserved oligomeric complex COG6