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    CG5953 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34985, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5953provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032587
    Locus tag
    Dmel_CG5953
    See related
    AllianceGenome:FB:FBgn0032587
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5953
    Summary
    Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5953 in Genome Data Viewer
    Location:
    36A2-36A3; 2-52 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (16508078..16532877, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (16508078..16532877, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44994 Neighboring gene Tetratricopeptide repeat protein 2 Neighboring gene mir-4943 stem loop Neighboring gene long non-coding RNA:CR45354 Neighboring gene long non-coding RNA:CR45355

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two sequential gene expression programs bridged by cell division support long-distance collective cell migration. Sun J, et al. Development, 2024 May 15. PMID 38646822, Free PMC Article
    2. Mechanisms of Groucho-mediated repression revealed by genome-wide analysis of Groucho binding and activity. Chambers M, et al. BMC Genomics, 2017 Feb 28. PMID 28245789, Free PMC Article
    3. Spatiotemporal dynamics and genome-wide association genome-wide association analysis of desiccation tolerance in Drosophila melanogaster. Rajpurohit S, et al. Mol Ecol, 2018 Sep. PMID 30051644, Free PMC Article
    4. Specific SR protein-dependent splicing substrates identified through genomic SELEX. Kim S, et al. Nucleic Acids Res, 2003 Apr 1. PMID 12655012, Free PMC Article
    5. Physiologic and anatomic characterization of the brain surface glia barrier of Drosophila. DeSalvo MK, et al. Glia, 2011 Sep. PMID 21351158, Free PMC Article

    See all (47) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5953-PA
    CG5953-PB
    CG5953-PC
    CG5953-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      16508078..16532877 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001273574.1 → NP_001260503.1  uncharacterized protein Dmel_CG5953, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260503.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VJK4
      Conserved Domains (1) summary
      pfam10545
      Location:86 → 170
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

    2. NM_135952.1 → NP_609796.1  uncharacterized protein Dmel_CG5953, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609796.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VJK4
      Related
      FBpp0080430, FBtr0080873
      Conserved Domains (1) summary
      pfam10545
      Location:86 → 170
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

    3. NM_165165.1 → NP_723976.1  uncharacterized protein Dmel_CG5953, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723976.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VJK4
      Related
      FBpp0080431, FBtr0080874
      Conserved Domains (1) summary
      pfam10545
      Location:86 → 170
      MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

    4. NM_001169518.1 → NP_001162989.1  uncharacterized protein Dmel_CG5953, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001162989.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A4IJ65, E1JHJ2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E1JHJ2 E1JHJ2
    Q9VJK4 Q9VJK4

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