SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein
Primary source: TAIR:AT2G38920
Locus tag: AT2G38920
See related: Araport:AT2G38920
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T7F6.9; T7F6_9
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 7

Sequence:: Chromosome: 2; NC_003071.7 (16248146..16251017, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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NM_001125002.1

Supported by ESTs:

NM_001336747.1

Supported by ESTs:

NM_001336748.1

Supported by ESTs:

NM_001336750.1

Supported by ESTs:

NM_129450.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein

NP_001118474.1

SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT1G02860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_001318380.1

SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT1G02860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_181426.2

SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT1G02860.1); Has 1650 Blast hits to 1628 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 1103; Fungi - 156; Plants - 232; Viruses - 1; Other Eukaryotes - 158 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

16248146..16251017 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001336749.1 → NP_001324932.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8GW10, Q9ZV14

UniProtKB/TrEMBL

A0A178VUL2, A0A5S9X592, A0A7G2EIQ4

Conserved Domains (2) summary

cd14482
Location:2 → 159

SPX_BAH1-like; SPX domain of the E3 ubiquitin-protein ligase BAH1/NLA and similar proteins

cd16536
Location:231 → 279

RING-HC_RNF10; RING finger, HC subclass, found in RING finger protein 10 (RNF10) and similar proteins
NM_001336747.1 → NP_001318380.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

B3H525
NM_129450.3 → NP_181426.2 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_181426.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8GW10, Q9ZV14

UniProtKB/TrEMBL

A0A178VUL2, A0A5S9X592, A0A7G2EIQ4

Conserved Domains (2) summary

cd14482
Location:2 → 159

SPX_BAH1-like; SPX domain of the E3 ubiquitin-protein ligase BAH1/NLA and similar proteins

cd16536
Location:231 → 279

RING-HC_RNF10; RING finger, HC subclass, found in RING finger protein 10 (RNF10) and similar proteins
NM_001336750.1 → NP_001324931.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8GW10, Q9ZV14

UniProtKB/TrEMBL

A0A178VUL2, A0A5S9X592, A0A7G2EIQ4

Conserved Domains (2) summary

cd14482
Location:2 → 159

SPX_BAH1-like; SPX domain of the E3 ubiquitin-protein ligase BAH1/NLA and similar proteins

cd16536
Location:231 → 279

RING-HC_RNF10; RING finger, HC subclass, found in RING finger protein 10 (RNF10) and similar proteins
NM_001125002.1 → NP_001118474.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001118474.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VUL2, A0A5S9X592, B3H7B1

Conserved Domains (2) summary

cd00162
Location:230 → 281

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cd14482
Location:2 → 159

SPX_BAH1-like; SPX domain of the E3 ubiquitin-protein ligase BAH1/NLA and similar proteins
NM_001336748.1 → NP_001324933.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B1L9