U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Calmodulin-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816390, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Calmodulin-binding protein
    Primary source
    TAIR:AT2G18750
    Locus tag
    AT2G18750
    See related
    Araport:AT2G18750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSF3.13; MSF3_13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (8125128..8128702)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene chromatin remodeling 8 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Vacuolar Na+/H+ antiporter cation selectivity is regulated by calmodulin from within the vacuole in a Ca2+- and pH-dependent manner. Yamaguchi T, et al. Proc Natl Acad Sci U S A, 2005 Nov 1. PMID 16249341, Free PMC Article
    2. Genes encoding calmodulin-binding proteins in the Arabidopsis genome. Reddy VS, et al. J Biol Chem, 2002 Mar 22. PMID 11782485
    3. Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Debernardi JM, et al. Plant J, 2014 Aug. PMID 24888433
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001036295.2
    NM_001202621.2
    NM_127431.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calmodulin binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Calmodulin-binding protein
    NP_001031372.1
    • Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT5G57580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001189550.1
    • Calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT5G57580.1).
    NP_565441.2
    • Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT5G57580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8125128..8128702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036295.2 → NP_001031372.1  Calmodulin-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031372.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SV51, Q944Q2, Q9ZV44
      UniProtKB/TrEMBL
      A0A178VP49, A0A5S9WZ39
      Conserved Domains (1) summary
      pfam07887
      Location:98 → 388
      Calmodulin_bind; Calmodulin binding protein-like

    2. NM_001202621.2 → NP_001189550.1  Calmodulin-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189550.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SV51, Q944Q2, Q9ZV44
      UniProtKB/TrEMBL
      A0A178VP49, A0A5S9WZ39
      Conserved Domains (1) summary
      pfam07887
      Location:98 → 388
      Calmodulin_bind; Calmodulin binding protein-like

    3. NM_127431.3 → NP_565441.2  Calmodulin-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565441.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SV51, Q944Q2, Q9ZV44
      UniProtKB/TrEMBL
      A0A178VP49, A0A5S9WZ39
      Conserved Domains (1) summary
      pfam07887
      Location:98 → 388
      Calmodulin_bind; Calmodulin binding protein-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C0SV51.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools