U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    hypothetical protein (DUF789) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814653, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    hypothetical protein (DUF789)
    Primary source
    TAIR:AT2G01260
    Locus tag
    AT2G01260
    See related
    Araport:AT2G01260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10A8.14; F10A8_14
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (135223..137916, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B15 Neighboring gene Ribosomal protein L30/L7 family protein Neighboring gene quiescin-sulfhydryl oxidase 2 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    NM_001335046.1
    NM_126187.4
    NM_201662.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    hypothetical protein (DUF789)
    NP_001318174.1
    • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565257.1
    • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 265 Blast hits to 263 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_973391.1
    • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      135223..137916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126187.4 → NP_565257.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565257.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS68, A0A654EQY0, Q9ZU41
      Conserved Domains (1) summary
      pfam05623
      Location:64 → 366
      DUF789; Protein of unknown function (DUF789)

    2. NM_001335046.1 → NP_001318174.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRY3, F4IN81

    3. NM_201662.3 → NP_973391.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973391.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS68, F4IN82
      Conserved Domains (1) summary
      pfam05623
      Location:64 → 296
      DUF789; Protein of unknown function (DUF789)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.