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    basic helix-loop-helix (bHLH) DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816529, updated on 18-Sep-2024

    Summary

    Official Full Name
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Primary source
    TAIR:AT2G20100
    Locus tag
    AT2G20100
    See related
    Araport:AT2G20100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2G17.10; T2G17_10
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (8677960..8682175)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene defensin-like protein Neighboring gene uncharacterized protein Neighboring gene Tesmin/TSO1-like CXC domain-containing protein Neighboring gene CONTINUOUS VASCULAR RING protein (DUF502)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001084454.2
    NM_001335659.1
    NM_001335660.1
    NM_127568.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity  
    enables protein binding PubMed 
    enables protein dimerization activity  
    Component Evidence Code Pubs
    located_in nucleus  

    General protein information

    Preferred Names
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    NP_001077923.1
    • basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29100.1); Has 824 Blast hits to 818 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 6; Plants - 666; Viruses - 2; Other Eukaryotes - 130 (source: NCBI BLink).
    NP_179600.2
    • basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29100.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8677960..8682175
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084454.2NP_001077923.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077923.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VY99
      Conserved Domains (1) summary
      cd11393
      Location:219266
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
    2. NM_001335659.1NP_001324190.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZD3, A0A654EVN0
    3. NM_127568.5NP_179600.2  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179600.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XZ8, Q7XHI5, Q9SL72
      UniProtKB/TrEMBL
      A0A5S9WZP8, A0A654EVN0, C0SV52
      Conserved Domains (1) summary
      cd11393
      Location:219266
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
    4. NM_001335660.1NP_001324191.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VY99
      Conserved Domains (1) summary
      cd11393
      Location:219266
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
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