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    OBP32pep protein, putative (Domain of unknown function DUF220) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838969, updated on 18-Sep-2024

    Summary

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    Official Full Name
    OBP32pep protein, putative (Domain of unknown function DUF220)
    Primary source
    TAIR:AT1G23590
    Locus tag
    AT1G23590
    See related
    Araport:AT1G23590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28C11.29
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (8359125..8360645, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF220) Neighboring gene transmembrane protein, putative (Domain of unknown function DUF220) Neighboring gene OBP32pep protein, putative (Domain of unknown function DUF220) Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084119.1
    NM_102208.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    OBP32pep protein, putative (Domain of unknown function DUF220)
    NP_001077588.1
    • Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 137 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_564199.1
    • Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 137 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8359125..8360645 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102208.2 → NP_564199.1  OBP32pep protein, putative (Domain of unknown function DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564199.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VR13, A0A654EHK7, Q1PFT0
      Conserved Domains (1) summary
      pfam02713
      Location:132 → 204
      DUF220; Domain of unknown function DUF220

    2. NM_001084119.1 → NP_001077588.1  OBP32pep protein, putative (Domain of unknown function DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077588.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VR13, A0A654EHK7, A8MQQ6
      Conserved Domains (1) summary
      pfam02713
      Location:110 → 182
      DUF220; Domain of unknown function DUF220
    Nucleotide Protein
    Heading Accession and Version

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