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    MATE efflux family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816673, updated on 18-Sep-2024

    Summary

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    Official Full Name
    MATE efflux family protein
    Primary source
    TAIR:AT2G21340
    Locus tag
    AT2G21340
    See related
    Araport:AT2G21340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3K23.10; F3K23_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (9132381..9136787)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene B-box zinc finger family protein Neighboring gene fructose-bisphosphate aldolase 1 Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain protein Neighboring gene tRNA-Pro Neighboring gene xylulose kinase-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Localization and expression of EDS5H a homologue of the SA transporter EDS5. Parinthawong N, et al. BMC Plant Biol, 2015 Jun 9. PMID 26055508, Free PMC Article
    2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127706.9
    NM_201775.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables xenobiotic transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MATE efflux family protein
    NP_565509.4
    • MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G39030.1); Has 7799 Blast hits to 7783 proteins in 1733 species: Archae - 152; Bacteria - 6456; Metazoa - 30; Fungi - 49; Plants - 387; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
    NP_973504.4
    • MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G39030.1); Has 7873 Blast hits to 7863 proteins in 1757 species: Archae - 156; Bacteria - 6520; Metazoa - 33; Fungi - 48; Plants - 395; Viruses - 0; Other Eukaryotes - 721 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9132381..9136787
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127706.9 → NP_565509.4  MATE efflux family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565509.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LDE3, Q8W4G3, Q9SJU3
      UniProtKB/TrEMBL
      A0A5S9WZW1
      Conserved Domains (2) summary
      COG0534
      Location:117 → 541
      NorM; Na+-driven multidrug efflux pump [Defense mechanisms]
      cd13136
      Location:115 → 539
      MATE_DinF_like; DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

    2. NM_201775.5 → NP_973504.4  MATE efflux family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973504.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EWA9, F4IGL9
      Conserved Domains (2) summary
      COG0534
      Location:117 → 538
      NorM; Na+-driven multidrug efflux pump [Defense mechanisms]
      cd13136
      Location:115 → 536
      MATE_DinF_like; DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W4G3.1

    Gene LinkOut

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