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    RABA5d RAB GTPase homolog A5D [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817724, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RABA5d
    Official Full Name
    RAB GTPase homolog A5D
    Primary source
    TAIR:AT2G31680
    Locus tag
    AT2G31680
    See related
    Araport:AT2G31680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRABA5d; RAB GTPase homolog A5D; T9H9.20; T9H9_20
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    Genomic context

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    See RABA5d in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (13473594..13475085, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene Stress responsive alpha-beta barrel domain protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128725.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    RAB GTPase homolog A5D
    NP_180726.1
    • RAB GTPase homolog A5D (RABA5d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5E (TAIR:AT1G05810.1); Has 27628 Blast hits to 27593 proteins in 754 species: Archae - 22; Bacteria - 125; Metazoa - 14573; Fungi - 3749; Plants - 3264; Viruses - 20; Other Eukaryotes - 5875 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13473594..13475085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128725.3 → NP_180726.1  RAB GTPase homolog A5D [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180726.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEC5, Q9SIP0
      UniProtKB/TrEMBL
      A0A178VPP2, A0A5S9X380
      Conserved Domains (1) summary
      cd01868
      Location:10 → 174
      Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SIP0.1

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