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    OTP43 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843829, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OTP43
    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT1G74900
    Locus tag
    AT1G74900
    See related
    Araport:AT1G74900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25A4.13; F25A4_13; organelle transcript processing defect 43
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    Genomic context

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    See OTP43 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (28133933..28135667)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAD(P)H:plastoquinone dehydrogenase complex subunit O Neighboring gene response regulator 15 Neighboring gene ncRNA Neighboring gene ADP-glucose pyrophosphorylase family protein Neighboring gene aldehyde dehydrogenase 10A8 Neighboring gene uncharacterized protein Neighboring gene Integrase-type DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana. de Longevialle AF, et al. Plant Cell, 2007 Oct. PMID 17965268, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106148.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_177628.2
    • organelle transcript processing defect 43 (OTP43); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G77360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28133933..28135667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106148.2 → NP_177628.2  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177628.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E906, Q67XS8
      Conserved Domains (3) summary
      PLN03218
      Location:161 → 415
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:232 → 259
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:136 → 173
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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