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    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844129, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
    Primary source
    TAIR:AT1G77940
    Locus tag
    AT1G77940
    See related
    Araport:AT1G77940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28K19.15; F28K19_15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (29303864..29305411, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor family protein Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene FANTASTIC four protein, putative (DUF3049) Neighboring gene AGAMOUS-like 67 Neighboring gene repressor ROX1-like protein Neighboring gene AGAMOUS-like 66

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    2. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106443.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
    NP_565164.1
    • Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L30e (InterPro:IPR000231); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT1G36240.1); Has 1074 Blast hits to 1073 proteins in 382 species: Archae - 212; Bacteria - 1; Metazoa - 396; Fungi - 147; Plants - 146; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29303864..29305411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106443.5 → NP_565164.1  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565164.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZ19, Q9SH07
      UniProtKB/TrEMBL
      A0A178WES2, A0A178WHX8, A0A384KKR2, A0A5S9WJC5, A0A654EGU7, Q0WSA0
      Conserved Domains (1) summary
      PTZ00106
      Location:2 → 108
      PTZ00106; 60S ribosomal protein L30; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZ19.1

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