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    PMEPCRA methylesterase PCR A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837701, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PMEPCRA
    Official Full Name
    methylesterase PCR A
    Primary source
    TAIR:AT1G11580
    Locus tag
    AT1G11580
    See related
    Araport:AT1G11580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPMEPCRA; methylesterase PCR A; T23J18.24; T23J18_24
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    Genomic context

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    See PMEPCRA in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (3888610..3890824)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NTF2-like protein Neighboring gene Plant thionin family protein Neighboring gene ncRNA Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pectin methylesterase gene AtPMEPCRA contributes to physiological adaptation to simulated and spaceflight microgravity in Arabidopsis. Xu P, et al. iScience, 2022 May 20. PMID 35602950, Free PMC Article
    2. Novel role for pectin methylesterase in Arabidopsis: a new function showing ribosome-inactivating protein (RIP) activity. De-la-Peña C, et al. Biochim Biophys Acta, 2008 May. PMID 18222123
    3. Arabidopsis PECTIN METHYLESTERASEs contribute to immunity against Pseudomonas syringae. Bethke G, et al. Plant Physiol, 2014 Feb. PMID 24367018, Free PMC Article
    4. Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis. Borderies G, et al. Electrophoresis, 2003 Oct. PMID 14595688
    5. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101031.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pectinesterase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA N-glycosylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region HDA PubMed 
    located_in membrane HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    methylesterase PCR A
    NP_172624.1
    • methylesterase PCR A (PMEPCRA); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G11590.1); Has 3127 Blast hits to 3075 proteins in 484 species: Archae - 6; Bacteria - 913; Metazoa - 1; Fungi - 197; Plants - 1984; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3888610..3890824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331997.1 → NP_001321758.1  methylesterase PCR A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARX5, A0A5S9TWL5

    2. NM_101031.3 → NP_172624.1  methylesterase PCR A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172624.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49007, Q1JPL7, Q94AF4, Q94C39, Q9LPX8, Q9LPX9
      UniProtKB/TrEMBL
      A0A5S9TWL5, A0A654EA26
      Conserved Domains (1) summary
      PLN02301
      Location:1 → 557
      PLN02301; pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1JPL7.3

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