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    HCO3- transporter family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819821, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HCO3- transporter family
    Primary source
    TAIR:AT3G06450
    Locus tag
    AT3G06450
    See related
    Araport:AT3G06450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24P17.6; F24P17_6
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (1975915..1980110, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Galactosyltransferase family protein Neighboring gene ubiquitin family protein Neighboring gene GNS1/SUR4 membrane protein family Neighboring gene GNS1/SUR4 membrane protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    2. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001125118.2
    NM_001337657.1
    NM_001337658.1
    NM_111520.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables solute:inorganic anion antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    HCO3- transporter family
    NP_001118590.1
    • HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_187296.2
    • HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2674 Blast hits to 1402 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 2029; Fungi - 304; Plants - 228; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1975915..1980110 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111520.5 → NP_187296.2  HCO3- transporter family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187296.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93Z13, Q9SQU8
      UniProtKB/TrEMBL
      A0A178V9G0, A0A5S9X9R5, A0A654F4M9
      Conserved Domains (1) summary
      cl23746
      Location:9 → 548
      Xan_ur_permease; Permease family

    2. NM_001125118.2 → NP_001118590.1  HCO3- transporter family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118590.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93Z13, Q9SQU8
      UniProtKB/TrEMBL
      A0A178V9G0, A0A5S9X9R5, A0A654F4M9
      Conserved Domains (1) summary
      cl23746
      Location:9 → 548
      Xan_ur_permease; Permease family

    3. NM_001337657.1 → NP_001326598.1  HCO3- transporter family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93Z13, Q9SQU8
      UniProtKB/TrEMBL
      A0A178V9G0, A0A5S9X9R5, A0A654F4M9
      Conserved Domains (1) summary
      cl23746
      Location:9 → 548
      Xan_ur_permease; Permease family

    4. NM_001337658.1 → NP_001326597.1  HCO3- transporter family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93Z13, Q9SQU8
      UniProtKB/TrEMBL
      A0A178V9G0, A0A5S9X9R5, A0A654F4M9
      Conserved Domains (1) summary
      cl23746
      Location:9 → 548
      Xan_ur_permease; Permease family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93Z13.1

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