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    late embryogenesis abundant protein-related / LEA protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821477, updated on 18-Sep-2024

    Summary

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    Official Full Name
    late embryogenesis abundant protein-related / LEA protein-like protein
    Primary source
    TAIR:AT3G19430
    Locus tag
    AT3G19430
    See related
    Araport:AT3G19430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (6736061..6738518, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene PTEN 2 Neighboring gene Pseudouridine synthase family protein Neighboring gene GroES-like zinc-binding alcohol dehydrogenase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112830.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    late embryogenesis abundant protein-related / LEA protein-like protein
    NP_188574.2
    • late embryogenesis abundant protein-related / LEA protein-related; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G60520.1); Has 407828 Blast hits to 124211 proteins in 3571 species: Archae - 1492; Bacteria - 100012; Metazoa - 145570; Fungi - 58500; Plants - 39690; Viruses - 10531; Other Eukaryotes - 52033 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6736061..6738518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338394.1 → NP_001326884.1  late embryogenesis abundant protein-related / LEA protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGJ3, A0A1I9LQM3, A0A384KXX5, A0A5S9XDN8

    2. NM_112830.3 → NP_188574.2  late embryogenesis abundant protein-related / LEA protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188574.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XDN8, F4JB74
      Conserved Domains (1) summary
      pfam06830
      Location:470 → 526
      Root_cap; Root cap
    Nucleotide Protein
    Heading Accession and Version

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