U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TBL41 TRICHOME BIREFRINGENCE-LIKE 41 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820714, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TBL41
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 41
    Primary source
    TAIR:AT3G14850
    Locus tag
    AT3G14850
    See related
    Araport:AT3G14850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TRICHOME BIREFRINGENCE-LIKE 41
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TBL41 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (4995426..4997785)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene epstein-barr nuclear antigen Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene tRNA-Cys Neighboring gene NHL domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_112347.4
    NM_202585.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 41
    NP_188103.2
    • TRICHOME BIREFRINGENCE-LIKE 41 (TBL41); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 38 (TAIR:AT1G29050.1); Has 1268 Blast hits to 1259 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1266; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974314.2
    • TRICHOME BIREFRINGENCE-LIKE 41 (TBL41); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 38 (TAIR:AT1G29050.1); Has 1339 Blast hits to 1315 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4995426..4997785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202585.3 → NP_974314.2  TRICHOME BIREFRINGENCE-LIKE 41 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974314.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DI65, F4IWA8, Q8W4B3, Q9LH70
      UniProtKB/TrEMBL
      A0A178VJP5, A0A5S9XCE2, A0A654F7A0
      Conserved Domains (1) summary
      PLN02629
      Location:34 → 351
      PLN02629; powdery mildew resistance 5

    2. NM_112347.4 → NP_188103.2  TRICHOME BIREFRINGENCE-LIKE 41 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188103.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IWA8
      Conserved Domains (1) summary
      pfam13839
      Location:1 → 252
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IWA8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools