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    PAP23 purple acid phosphatase 23 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827004, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PAP23
    Official Full Name
    purple acid phosphatase 23
    Primary source
    TAIR:AT4G13700
    Locus tag
    AT4G13700
    See related
    Araport:AT4G13700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPAP23; F18A5.90; F18A5_90; purple acid phosphatase 23
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    Genomic context

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    See PAP23 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (7957072..7958919, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF295) Neighboring gene RNA-binding protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Inosine triphosphate pyrophosphatase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression patterns of purple acid phosphatase genes in Arabidopsis organs and functional analysis of AtPAP23 predominantly transcribed in flower. Zhu H, et al. Plant Mol Biol, 2005 Nov. PMID 16244908
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The isolation and expression of PAP23 in A. thaliana flowers is reported.
      Title: Expression patterns of purple acid phosphatase genes in Arabidopsis organs and functional analysis of AtPAP23 predominantly transcribed in flower.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001340875.1
    NM_117444.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acid phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables acid phosphatase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within dephosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    purple acid phosphatase 23
    NP_193106.3
    • purple acid phosphatase 23 (PAP23); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 15 (TAIR:AT3G07130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7957072..7958919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117444.3 → NP_193106.3  purple acid phosphatase 23 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193106.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6TPH1, Q9SVP2
      Conserved Domains (3) summary
      cd00839
      Location:185 → 439
      MPP_PAPs; purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain
      pfam00149
      Location:187 → 401
      Metallophos; Calcineurin-like phosphoesterase
      pfam16656
      Location:65 → 176
      Pur_ac_phosph_N; Purple acid Phosphatase, N-terminal domain

    2. NM_001340875.1 → NP_001328896.1  purple acid phosphatase 23 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1J6, A0A1P8B627
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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