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    HTA2 histone H2A 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828831, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HTA2
    Official Full Name
    histone H2A 2
    Primary source
    TAIR:AT4G27230
    Locus tag
    AT4G27230
    See related
    Araport:AT4G27230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    histone H2A 2; M4I22.40; M4I22_40
    Summary
    Encodes HTA2, a histone H2A protein.
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    Genomic context

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    See HTA2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (13637236..13638449, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene NB-ARC domain-containing disease resistance protein Neighboring gene zinc finger (C2H2 type) family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PRMT11: a new Arabidopsis MBD7 protein partner with arginine methyltransferase activity. Scebba F, et al. Plant J, 2007 Oct. PMID 17711414
    2. Split luciferase complementation assay to study protein-protein interactions in Arabidopsis protoplasts. Fujikawa Y, et al. Plant J, 2007 Oct. PMID 17662028
    3. Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance. Earley K, et al. Genes Dev, 2006 May 15. PMID 16648464, Free PMC Article
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203923.1
    NM_118857.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    histone H2A 2
    NP_001190852.1
    • histone H2A 2 (HTA2); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G54640.1).
    NP_194453.1
    • histone H2A 2 (HTA2); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G54640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13637236..13638449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118857.4 → NP_194453.1  histone H2A 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194453.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81826, Q8L8Z9
      UniProtKB/TrEMBL
      A0A178V3G6, A0A384LFJ0, Q0WRA6
      Conserved Domains (1) summary
      PLN00157
      Location:1 → 131
      PLN00157; histone H2A; Provisional

    2. NM_001203923.1 → NP_001190852.1  histone H2A 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190852.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81826, Q8L8Z9
      UniProtKB/TrEMBL
      A0A178V3G6, A0A384LFJ0, Q0WRA6
      Conserved Domains (1) summary
      PLN00157
      Location:1 → 131
      PLN00157; histone H2A; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81826.1

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