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    ARF16 auxin response factor 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829131, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARF16
    Official Full Name
    auxin response factor 16
    Primary source
    TAIR:AT4G30080
    Locus tag
    AT4G30080
    See related
    Araport:AT4G30080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    auxin response factor 16; F6G3.110; F6G3_110
    Summary
    Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus.
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    Genomic context

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    See ARF16 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (14703065..14706354, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene low-molecular-weight cysteine-rich 19 Neighboring gene golgin family A protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hormone synergy: Auxin and jasmonate boost abscisic acid signaling via ARF10 and ARF16. Bascom C. Plant Cell, 2023 Mar 15. PMID 36651138, Free PMC Article
    2. Auxin controls seed dormancy through stimulation of abscisic acid signaling by inducing ARF-mediated ABI3 activation in Arabidopsis. Liu X, et al. Proc Natl Acad Sci U S A, 2013 Sep 17. PMID 23986496, Free PMC Article
    3. Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Wang JW, et al. Plant Cell, 2005 Aug. PMID 16006581, Free PMC Article
    4. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Mallory AC, et al. Plant Cell, 2005 May. PMID 15829600, Free PMC Article
    5. Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Gutierrez L, et al. Plant Cell, 2009 Oct. PMID 19820192, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Hormone synergy: Auxin and jasmonate boost abscisic acid signaling via ARF10 and ARF16.
      Title: Hormone synergy: Auxin and jasmonate boost abscisic acid signaling via ARF10 and ARF16.
    2. Auxin recruits AUXIN RESPONSE FACTOR 10 and AUXIN RESPONSE FACTOR 16 to control the expression of ABI3 during seed germination.
      Title: Auxin controls seed dormancy through stimulation of abscisic acid signaling by inducing ARF-mediated ABI3 activation in Arabidopsis.
    3. Phenotypic plasticity of adventitious rooting is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Repressor/Activator Balance Is Unaltered by Disruptions to ARF10 and ARF16.
      Title: Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance.
    4. ARF10 and ARF16 control root cap formation in root. Auxin and micro RNA 160(miR160) regulate the expression of ARF10 and ARF16 genes independently. [ARF16]
      Title: Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119154.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables miRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell division IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pattern specification process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within root cap development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within root cap development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    auxin response factor 16
    NP_567841.1
    • auxin response factor 16 (ARF16); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 10 (TAIR:AT2G28350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14703065..14706354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119154.5 → NP_567841.1  auxin response factor 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567841.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B2CTE3, B2CTE4, Q93YR9, Q9SZW1
      UniProtKB/TrEMBL
      A0A5S9XX90
      Conserved Domains (2) summary
      pfam02362
      Location:120 → 221
      B3; B3 DNA binding domain
      pfam06507
      Location:279 → 362
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93YR9.1

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