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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829971, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT4G38150
    Locus tag
    AT4G38150
    See related
    Araport:AT4G38150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D10.270; F20D10_270
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (17900570..17902282, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene histone deacetylase 1 Neighboring gene RING/U-box superfamily protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene FAR1-related sequence 9 Neighboring gene FAR1-related sequence 5 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    • At4g38160_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At4g38160_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_001036729.1
    NM_001342482.1
    NM_119976.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_001031806.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
    NP_001320158.1
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17900570..17902282 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342482.1 → NP_001320158.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S9H9, Q9SZL5
      UniProtKB/TrEMBL
      A0A654FWM0, A0A7G2F4A7
      Conserved Domains (3) summary
      PLN03081
      Location:155 → 292
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:136 → 160
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:164 → 211
      PPR_2; PPR repeat family

    2. NM_119976.5 → NP_195528.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195528.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S9H9, Q9SZL5
      UniProtKB/TrEMBL
      A0A654FWM0, A0A7G2F4A7
      Conserved Domains (3) summary
      PLN03081
      Location:155 → 292
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:136 → 160
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:164 → 211
      PPR_2; PPR repeat family

    3. NM_001036729.1 → NP_001031806.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031806.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S9H9, Q9SZL5
      UniProtKB/TrEMBL
      A0A654FWM0, A0A7G2F4A7
      Conserved Domains (3) summary
      PLN03081
      Location:155 → 292
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:136 → 160
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:164 → 211
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZL5.1

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