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    CID10 CTC-interacting domain 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824101, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CID10
    Official Full Name
    CTC-interacting domain 10
    Primary source
    TAIR:AT3G49390
    Locus tag
    AT3G49390
    See related
    Araport:AT3G49390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CTC-interacting domain 10
    Summary
    RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins.
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    Genomic context

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    See CID10 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (18314006..18318041, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Calcium-dependent protein kinase (CDPK) family protein Neighboring gene IQ-domain 15 Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Transcription factor IIIC, subunit 5 Neighboring gene Got1/Sft2-like vescicle transport protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001035756.2
    NM_114799.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTC-interacting domain 10
    NP_001030833.1
    • CTC-interacting domain 10 (CID10); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_190508.1
    • CTC-interacting domain 10 (CID10); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.1); Has 1677 Blast hits to 1486 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 214; Plants - 535; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18314006..18318041 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339409.1 → NP_001325461.1  CTC-interacting domain 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQ17, Q9SG10
      UniProtKB/TrEMBL
      A0A178VC11, A0A5S9XK42, A0A654FE94
      Conserved Domains (3) summary
      COG0724
      Location:68 → 287
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12459
      Location:167 → 246
      RRM1_CID8_like; RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:262 → 342
      RRM2_CID8_like; RNA recognition motif 2 (RRM2) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins

    2. NM_114799.4 → NP_190508.1  CTC-interacting domain 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190508.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQ17, Q9SG10
      UniProtKB/TrEMBL
      A0A178VC11, A0A5S9XK42, A0A654FE94
      Conserved Domains (3) summary
      COG0724
      Location:68 → 287
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12459
      Location:167 → 246
      RRM1_CID8_like; RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:262 → 342
      RRM2_CID8_like; RNA recognition motif 2 (RRM2) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins

    3. NM_001035756.2 → NP_001030833.1  CTC-interacting domain 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030833.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQ17, Q9SG10
      UniProtKB/TrEMBL
      A0A178VC11, A0A5S9XK42, A0A654FE94
      Conserved Domains (3) summary
      COG0724
      Location:68 → 287
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12459
      Location:167 → 246
      RRM1_CID8_like; RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:262 → 342
      RRM2_CID8_like; RNA recognition motif 2 (RRM2) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SG10.1

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