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    pirin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825095, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pirin
    Primary source
    TAIR:AT3G59260
    Locus tag
    AT3G59260
    See related
    Araport:AT3G59260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (21903839..21905188)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNI-like superfamily protein Neighboring gene pirin carboxy-terminal region protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene FBD-like domain family protein Neighboring gene Protein Transporter, Pam16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115788.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pirin
    NP_191485.1
    • pirin, putative; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: pirin (TAIR:AT3G59220.1); Has 7341 Blast hits to 7341 proteins in 1468 species: Archae - 68; Bacteria - 4652; Metazoa - 72; Fungi - 217; Plants - 124; Viruses - 0; Other Eukaryotes - 2208 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21903839..21905188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115788.1 → NP_191485.1  pirin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191485.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LX45
      UniProtKB/TrEMBL
      A0A178VH80
      Conserved Domains (3) summary
      COG1741
      Location:16 → 258
      YhaK; Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]
      pfam02678
      Location:5 → 101
      Pirin; Pirin
      pfam05726
      Location:154 → 261
      Pirin_C; Pirin C-terminal cupin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LX45.1

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