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    DPA Transcription factor DP [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830987, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DPA
    Official Full Name
    Transcription factor DP
    Primary source
    TAIR:AT5G02470
    Locus tag
    AT5G02470
    See related
    Araport:AT5G02470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DPA TRANSCRIPTION FACTOR; T22P11.60; T22P11_60
    Summary
    core cell cycle genes
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    Genomic context

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    See DPA in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (542318..544955, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene ncRNA Neighboring gene HSP20-like chaperones superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual regulations of cell cycle regulator DPa by auxin in Arabidopsis root distal stem cell maintenance. Wang J, et al. Proc Natl Acad Sci U S A, 2023 May 9. PMID 37126711, Free PMC Article
    2. E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue-specific expression of rice and tobacco proliferating cell nuclear antigen promoters. Kosugi S, et al. Plant J, 2002 Jan. PMID 12060226
    3. The role of the Arabidopsis E2FB transcription factor in regulating auxin-dependent cell division. Magyar Z, et al. Plant Cell, 2005 Sep. PMID 16055635, Free PMC Article
    4. Characterization of two distinct DP-related genes from Arabidopsis thaliana. Magyar Z, et al. FEBS Lett, 2000 Dec 1. PMID 11108847
    5. Arabidopsis S6 kinase mutants display chromosome instability and altered RBR1-E2F pathway activity. Henriques R, et al. EMBO J, 2010 Sep 1. PMID 20683442, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Dual regulations of cell cycle regulator DPa by auxin in Arabidopsis root distal stem cell maintenance.
      Title: Dual regulations of cell cycle regulator DPa by auxin in Arabidopsis root distal stem cell maintenance.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_120325.4
    NM_180696.2
    NM_180697.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of DRM complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription factor DP
    NP_195867.2
    • DPA; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: Transcription factor DP (TAIR:AT5G03415.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851027.1
    • DPA; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: Transcription factor DP (TAIR:AT5G03415.1); Has 435 Blast hits to 435 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
    NP_851028.1
    • DPA; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), Transcription factor DP, C-terminal (InterPro:IPR014889), Transcription factor DP (InterPro:IPR015648), Transcription factor DP, subgroup (InterPro:IPR016556); BEST Arabidopsis thaliana protein match is: Transcription factor DP (TAIR:AT5G03415.1); Has 435 Blast hits to 435 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      542318..544955 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180697.3 → NP_851028.1  Transcription factor DP [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851028.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNY3, Q9LZ55
      UniProtKB/TrEMBL
      A0A178ULD9, A0A5S9Y0Q2
      Conserved Domains (3) summary
      cd14458
      Location:140 → 184
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:53 → 133
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:140 → 249
      DP; Transcription factor DP

    2. NM_120325.4 → NP_195867.2  Transcription factor DP [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195867.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNY3, Q9LZ55
      UniProtKB/TrEMBL
      A0A178ULD9, A0A5S9Y0Q2
      Conserved Domains (3) summary
      cd14458
      Location:140 → 184
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:53 → 133
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:140 → 249
      DP; Transcription factor DP

    3. NM_180696.2 → NP_851027.1  Transcription factor DP [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851027.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNY3, Q9LZ55
      UniProtKB/TrEMBL
      A0A178ULD9, A0A5S9Y0Q2
      Conserved Domains (3) summary
      cd14458
      Location:140 → 184
      DP_DD; coiled coil [structural motif]
      pfam02319
      Location:53 → 133
      E2F_TDP; E2F/DP family winged-helix DNA-binding domain
      pfam08781
      Location:140 → 249
      DP; Transcription factor DP
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNY3.1

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