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    dentin sialophosphoprotein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831892, updated on 18-Sep-2024

    Summary

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    Official Full Name
    dentin sialophosphoprotein-like protein
    Primary source
    TAIR:AT5G02520
    Locus tag
    AT5G02520
    See related
    Araport:AT5G02520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    KINETOCHORE NULL 2; KNL2; T22P11.110; T22P11_110
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (561179..564142)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tRNA-His Neighboring gene UDP-glucose 6-dehydrogenase Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeting of Arabidopsis KNL2 to Centromeres Depends on the Conserved CENPC-k Motif in Its C Terminus. Sandmann M, et al. Plant Cell, 2017 Jan. PMID 28062749, Free PMC Article
    2. Arabidopsis kinetochore null2 is an upstream component for centromeric histone H3 variant cenH3 deposition at centromeres. Lermontova I, et al. Plant Cell, 2013 Sep. PMID 24014547, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data suggest that KINETOCHORE NULL2 (KNL2) recognizes centromeric nucleosomes, similar to centromere protein C (CENP-C), via the CENPC-k motif and binds adjoining DNA.
      Title: Targeting of Arabidopsis KNL2 to Centromeres Depends on the Conserved CENPC-k Motif in Its C Terminus.
    2. Arabidopsis KNL2 colocalizes with cenH3 and is associated with centromeres during all stages of the mitotic cell cycle, except from metaphase to mid-anaphase.
      Title: Arabidopsis kinetochore null2 is an upstream component for centromeric histone H3 variant cenH3 deposition at centromeres.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001342657.1
    NM_001342658.1
    NM_120330.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in CENP-A containing chromatin assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromocenter IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    dentin sialophosphoprotein-like protein
    NP_568101.4
    • CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      561179..564142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120330.7 → NP_568101.4  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568101.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KCE9, Q94A31, Q9LZ50
      UniProtKB/TrEMBL
      A0A654FXS5
      Conserved Domains (1) summary
      pfam09133
      Location:19 → 112
      SANTA; SANTA (SANT Associated)

    2. NM_001342657.1 → NP_001332609.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHH1, A0A5S9Y0S5

    3. NM_001342658.1 → NP_001332608.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHH3, A0A654FXS5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KCE9.1

    Gene LinkOut

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