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    EMB2107 26S proteasome regulatory subunit, putative (RPN5) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830850, updated on 18-Sep-2024

    Summary

    Official Symbol
    EMB2107
    Official Full Name
    26S proteasome regulatory subunit, putative (RPN5)
    Primary source
    TAIR:AT5G09900
    Locus tag
    AT5G09900
    See related
    Araport:AT5G09900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 2107; EMBRYO DEFECTIVE 2107; MARIPOSA; MSA; MYH9.11; MYH9_11; REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A; RPN5A
    Summary
    Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.
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    Genomic context

    See EMB2107 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (3089278..3093020, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Splicing factor, CC1-like protein Neighboring gene Protein kinase family protein Neighboring gene Ras-related small GTP-binding family protein Neighboring gene ncRNA Neighboring gene RNA polymerase II, Rpb4, core protein Neighboring gene ABC transporter family protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001125730.1
    NM_121027.4
    NM_203029.2

    General protein information

    Preferred Names
    26S proteasome regulatory subunit, putative (RPN5)
    NP_001119202.1
    • EMBRYO DEFECTIVE 2107 (EMB2107); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, embryo development ending in seed dormancy; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase subunit 5B (TAIR:AT5G64760.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_196552.1
    • EMBRYO DEFECTIVE 2107 (EMB2107); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase subunit 5B (TAIR:AT5G64760.2); Has 836 Blast hits to 828 proteins in 231 species: Archae - 0; Bacteria - 6; Metazoa - 300; Fungi - 280; Plants - 112; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    NP_974758.1
    • EMBRYO DEFECTIVE 2107 (EMB2107); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase subunit 5B (TAIR:AT5G64760.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3089278..3093020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121027.4NP_196552.1  26S proteasome regulatory subunit, putative (RPN5) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196552.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIB6
      UniProtKB/TrEMBL
      A0A178UR80, A0A5S9Y352, A0A654FZY5
      Conserved Domains (1) summary
      COG5071
      Location:7436
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    2. NM_001125730.1NP_001119202.1  26S proteasome regulatory subunit, putative (RPN5) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119202.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H6B0
      Conserved Domains (1) summary
      COG5071
      Location:7344
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    3. NM_203029.2NP_974758.1  26S proteasome regulatory subunit, putative (RPN5) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974758.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y352, A0A654FZY5, F4KFD7
      Conserved Domains (1) summary
      COG5071
      Location:3436
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]