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    ATP5 delta subunit of Mt ATP synthase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831186, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATP5
    Official Full Name
    delta subunit of Mt ATP synthase
    Primary source
    TAIR:AT5G13450
    Locus tag
    AT5G13450
    See related
    Araport:AT5G13450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    delta subunit of Mt ATP synthase
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    Genomic context

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    See ATP5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (4310254..4312066, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene Ubiquinol-cytochrome C reductase iron-sulfur subunit Neighboring gene Ubiquinol-cytochrome C reductase iron-sulfur subunit Neighboring gene IQ-domain 11 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense expression of mitochondrial ATP synthase subunits OSCP (ATP5) and gamma (ATP3) alters leaf morphology, metabolism and gene expression in Arabidopsis. Robison MM, et al. Plant Cell Physiol, 2009 Oct. PMID 19748911
    2. The products of the mitochondrial orf25 and orfB genes are FO components in the plant F1FO ATP synthase. Heazlewood JL, et al. FEBS Lett, 2003 Apr 10. PMID 12681508
    3. Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. Kruft V, et al. Plant Physiol, 2001 Dec. PMID 11743114, Free PMC Article
    4. The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions. Zhang Y, et al. Plant Physiol, 2018 Jul. PMID 29794018, Free PMC Article
    5. Resolving and identifying protein components of plant mitochondrial respiratory complexes using three dimensions of gel electrophoresis. Meyer EH, et al. J Proteome Res, 2008 Feb. PMID 18189341

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Aantisense expression of atp5 reduces levels of ATP5 protein, alters total cellular ATP levels, impairs growth and alters leaf morphology.
      Title: Antisense expression of mitochondrial ATP synthase subunits OSCP (ATP5) and gamma (ATP3) alters leaf morphology, metabolism and gene expression in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036798.1
    NM_121348.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cobalt ion binding HDA PubMed 
    enables proton-transporting ATP synthase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables proton-transporting ATP synthase activity, rotational mechanism ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables zinc ion binding HDA PubMed 
    Process Evidence Code Pubs
    involved_in proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 
    part_of proton-transporting ATP synthase complex HDA PubMed 
    part_of proton-transporting ATP synthase complex, catalytic core F(1) ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    delta subunit of Mt ATP synthase
    NP_001031875.1
    • delta subunit of Mt ATP synthase (ATP5); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, cobalt ion binding, zinc ion binding; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 5632 Blast hits to 5632 proteins in 1944 species: Archae - 0; Bacteria - 3697; Metazoa - 218; Fungi - 134; Plants - 154; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink).
    NP_196849.1
    • delta subunit of Mt ATP synthase (ATP5); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, cobalt ion binding, zinc ion binding; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4310254..4312066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121348.4 → NP_196849.1  delta subunit of Mt ATP synthase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196849.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93W68, Q96251, Q9LYR1
      UniProtKB/TrEMBL
      A0A178UJF9, A0A5S9Y3S6
      Conserved Domains (1) summary
      pfam00213
      Location:64 → 229
      OSCP; ATP synthase delta (OSCP) subunit

    2. NM_001036798.1 → NP_001031875.1  delta subunit of Mt ATP synthase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031875.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DGP8
      Conserved Domains (1) summary
      pfam00213
      Location:48 → 181
      OSCP; ATP synthase delta (OSCP) subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96251.2

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